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Completeness Assessment of Genome/Transcriptome Sequences

About the developers

Citation

References

 

Release Notes

    2018-12-03 (ver. 1.2.1)
      Actinopterygii (ray-finned fishes) dataset is added to BUSCO v2/v3 analysis.
     
     
    2018-07-31 (ver. 1.2.0)
      The proportions of nucleotides in the sequences longer than 1Mb and 10Mb in the entire genome
      assemblies given are computed and displayed. This allows users to assess if the major proportion of
      the given genome assembly consists of chromosome-sized sequences or not.

      The length distribution of the gaps (‘NNNNN’) is displayed in the result page of genome assessment.

      Updated the database.
     
     
    2018-01-12 (ver. 1.1.0)
      Custom parameters are available for gene prediction in CEGMA ('Max intron length' and 'Gene flanks').
      See FAQ for the details.
     
     
    2017-07-12 (ver. 1.0.1)
      Protists ensembl dataset is added to BUSCO v2/v3 analysis.
      Bug fixes.
     
     
    2017-07-06
      gVolante paper is published in Bioinformatics.
     
     
    2017-04-14 (ver. 1.0.0)
      This release adds BUSCO v2 to an analysis engine for completeness assessment.

      Resource and software:
        CVG ver.10042017, CEGMA ver.2.5, BUSCO ver.1.22, BUSCO ver.2.0.1 *, GeneWise ver.2.2.3-rc7,
        Augustus ver.3.2.2, HMMER ver.3.1b2, and NCBI BLAST ver.2.2.31.
        * We have confirmed that the latest version, ‘ver.3.0.1’ yields identical results to ver.2.0.1.
     
     
    2017-03-06 (ver. 0.7.2)
      Bug fixes.
     
     
    2016-11-28 (ver. 0.7.1)
      This is the first public version of gVolante that contains the following resource and software:
        CVG ver.20062015, CEGMA ver.2.5, BUSCO ver.1.22, GeneWise ver.2.2.3-rc7, Augustus ver.3.2.2,
        HMMER ver.3.1b2, and NCBI BLAST ver.2.2.31.