gVolante - Completeness Assessment of Genome/Transcriptome Assembly

Completeness Score Database

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Genome/Transcriptome:

All Genome Transcriptome

% of Complete:

All ≥70 ≥80 ≥85 ≥90 ≥95

% of Partial:

All ≥70 ≥80 ≥85 ≥90 ≥95 ≥99

% of Missing:

All ≤20 ≤10 ≤5 ≤3 ≤1 ≤0.5

Species	Taxonomic category	Type	Assembly version	Completeness Assessment
Species	Taxonomic category	Type	Assembly version	Program, Ortholog set	# of core genes queried	# of com- plete	% of com- plete	Avg. ortho per core genes	% of multi- ortho	# of com- plete + partial	% of com- plete + partial	# of missing	% of missing
Homo sapiens (human)	Mammalia, Vertebrata, Metazoa, Eukaryota	genome	GRCh38.p9	CEGMA, CVG	233	215	92.27	1.11	8.84	230	98.71	3	1.29
Pan troglodytes (chimpanzee)	Mammalia, Vertebrata, Metazoa, Eukaryota	genome	Pan_troglodytes-2.1.4, CHIMP2.1.4, panTro4	CEGMA, CVG	233	212	90.99	1.09	8.02	228	97.85	5	2.15
Pan troglodytes (chimpanzee)	Mammalia, Vertebrata, Metazoa, Eukaryota	genome	Pan_tro3.0	CEGMA, CVG	233	213	91.42	1.13	10.33	229	98.28	4	1.72
Callithrix jacchus (white-tufted-ear marmoset)	Mammalia, Vertebrata, Metazoa, Eukaryota	genome	Callithrix_jacchus-3.2, calJac3	CEGMA, CVG	233	216	92.7	1.17	12.96	227	97.42	6	2.58
Saimiri boliviensis (bolivian squirrel monkey)	Mammalia, Vertebrata, Metazoa, Eukaryota	genome	SaiBol1.0	CEGMA, CVG	233	212	90.99	1.09	8.02	231	99.14	2	0.86
Mus musculus (house mouse)	Mammalia, Vertebrata, Metazoa, Eukaryota	genome	GRCm38.p5	CEGMA, CVG	233	225	96.57	1.11	8.44	231	99.14	2	0.86
Heterocephalus glaber (naked mole-rat)	Mammalia, Vertebrata, Metazoa, Eukaryota	genome	HetGla_1.0	CEGMA, CVG	233	217	93.13	1.48	29.49	230	98.71	3	1.29
Heterocephalus glaber (naked mole-rat)	Mammalia, Vertebrata, Metazoa, Eukaryota	genome	hetGla2, HetGla_female_1.0	CEGMA, CVG	233	220	94.42	1.4	24.55	230	98.71	3	1.29
Bos taurus (cattle)	Mammalia, Vertebrata, Metazoa, Eukaryota	genome	ARS-UCD1.2	CEGMA, CVG	233	219	93.99	1.07	6.85	231	99.14	2	0.86
Camelus ferus (wild bactrian camel)	Mammalia, Vertebrata, Metazoa, Eukaryota	genome	CB1	CEGMA, CVG	233	217	93.13	1.06	6.45	228	97.85	5	2.15
Equus caballus (horse)	Mammalia, Vertebrata, Metazoa, Eukaryota	genome	EquCab3.0	CEGMA, CVG	233	222	95.28	1.05	3.6	232	99.57	1	0.43
Canis lupus familiaris (dog)	Mammalia, Vertebrata, Metazoa, Eukaryota	genome	CanFam3.1, canFam3	CEGMA, CVG	233	221	94.85	1.07	5.43	229	98.28	4	1.72
Felis catus (domestic cat)	Mammalia, Vertebrata, Metazoa, Eukaryota	genome	Felis_catus_8.0, felCat8	CEGMA, CVG	233	215	92.27	1.04	3.72	230	98.71	3	1.29
Panthera tigris (amur tiger)	Mammalia, Vertebrata, Metazoa, Eukaryota	genome	PanTig1.0	CEGMA, CVG	233	212	90.99	1.03	3.3	231	99.14	2	0.86
Ailuropoda melanoleuca (giant panda)	Mammalia, Vertebrata, Metazoa, Eukaryota	genome	AilMel_1.0, ailMel1	CEGMA, CVG	233	213	91.42	1.03	2.82	229	98.28	4	1.72
Desmodus rotundus (common vampire bat)	Mammalia, Vertebrata, Metazoa, Eukaryota	genome	ASM294091v2	CEGMA, CVG	233	215	92.27	1.03	3.26	228	97.85	5	2.15
Loxodonta africana (african savanna elephant)	Mammalia, Vertebrata, Metazoa, Eukaryota	genome	Loxafr3.0, loxArf3	CEGMA, CVG	233	219	93.99	1.04	4.11	229	98.28	4	1.72
Phocoena phocoena (harbor porpoise)	Mammalia, Vertebrata, Metazoa, Eukaryota	genome	ASM307100v1	CEGMA, CVG	233	215	92.27	1.05	4.19	230	98.71	3	1.29
Tursiops truncatus (common bottlenose dolphin)	Mammalia, Vertebrata, Metazoa, Eukaryota	genome	Ttru_1.4, turTru2	CEGMA, CVG	233	163	69.96	1.28	17.79	225	96.57	8	3.43
Giraffa camelopardalis tippelskirchi (giraffe)	Mammalia, Vertebrata, Metazoa, Eukaryota	genome	ASM165123v1	CEGMA, CVG	233	186	79.83	1.11	10.75	229	98.28	4	1.72
Dasypus novemcinctus (nine-banded armadillo)	Mammalia, Vertebrata, Metazoa, Eukaryota	genome	Dasnov3.0, dasNov3	CEGMA, CVG	233	196	84.12	1.12	9.69	227	97.42	6	2.58
Choloepus hoffmanni (hoffmann's two-toed sloth)	Mammalia, Vertebrata, Metazoa, Eukaryota	genome	C_hoffmanni-2.0.1	CEGMA, CVG	233	178	76.39	1.4	26.97	227	97.42	6	2.58
Macropus eugenii (tammar wallaby)	Mammalia, Vertebrata, Metazoa, Eukaryota	genome	Meug_1.1, macEug2	CEGMA, CVG	233	97	41.63	1.32	24.74	194	83.26	39	16.74
Sarcophilus harrisii (tasmanian devil)	Mammalia, Vertebrata, Metazoa, Eukaryota	genome	Devil_ref_v7.0, sarHar1	CEGMA, CVG	233	209	89.7	1.02	2.39	230	98.71	3	1.29
Phascolarctos cinereus (koala)	Mammalia, Vertebrata, Metazoa, Eukaryota	genome	phaCin_unsw_v4.1	CEGMA, CVG	233	216	92.7	1.08	6.02	230	98.71	3	1.29
Monodelphis domestica (gray short-tailed opossum)	Mammalia, Vertebrata, Metazoa, Eukaryota	genome	MonDom5	CEGMA, CVG	233	214	91.85	1.12	7.94	229	98.28	4	1.72
Ornithorhynchus anatinus (platypus)	Mammalia, Vertebrata, Metazoa, Eukaryota	genome	Ornithorhynchus_anatinus-5.0.1	CEGMA, CVG	233	182	78.11	1.19	13.74	228	97.85	5	2.15
Taeniopygia guttata (zebra finch)	Aves, Vertebrata, Metazoa, Eukaryota	genome	Taeniopygia_guttata-3.2.4	CEGMA, CVG	233	219	93.99	1.05	4.57	232	99.57	1	0.43
Coturnix japonica (japanese quail)	Aves, Vertebrata, Metazoa, Eukaryota	genome	Coja_2.0a	CEGMA, CVG	233	226	97	1.04	3.1	231	99.14	2	0.86
Coturnix japonica (japanese quail)	Aves, Vertebrata, Metazoa, Eukaryota	genome	Coturnix_japonica_2.0	CEGMA, CVG	233	227	97.42	1.03	2.64	232	99.57	1	0.43
Gallus gallus (chicken)	Aves, Vertebrata, Metazoa, Eukaryota	genome	Gallus_gallus-5.0	CEGMA, CVG	233	225	96.57	1.02	1.78	232	99.57	1	0.43
Gallus gallus (chicken)	Aves, Vertebrata, Metazoa, Eukaryota	genome	GRCg6a	CEGMA, CVG	233	226	97	1.02	1.77	232	99.57	1	0.43
Meleagris gallopavo (wild turkey)	Aves, Vertebrata, Metazoa, Eukaryota	genome	Turkey_5.0	CEGMA, CVG	233	205	87.98	1.03	2.93	231	99.14	2	0.86
Anas platyrhynchos (wild duck)	Aves, Vertebrata, Metazoa, Eukaryota	genome	BGI_duck_1.0	CEGMA, CVG	233	205	87.98	1.07	7.32	229	98.28	4	1.72
Melopsittacus undulatus (budgerigar)	Aves, Vertebrata, Metazoa, Eukaryota	genome	Melopsittacus_undulatus_6.3, melUnd1	CEGMA, CVG	233	208	89.27	1.02	2.4	227	97.42	6	2.58
Columba livia (rock pigeon)	Aves, Vertebrata, Metazoa, Eukaryota	genome	Cliv_2.1	CEGMA, CVG	233	217	93.13	1.03	1.84	232	99.57	1	0.43
Gavialis gangeticus (gharial)	Reptilia, Vertebrata, Metazoa, Eukaryota	genome	GavGan_comp1	CEGMA, CVG	233	187	80.26	1.01	0.53	222	95.28	11	4.72
Gavialis gangeticus (gharial)	Reptilia, Vertebrata, Metazoa, Eukaryota	genome	ggan_v0.2	CEGMA, CVG	233	142	60.94	1.18	14.79	226	97	7	3
Chrysemys picta bellii (painted turtle)	Reptilia, Vertebrata, Metazoa, Eukaryota	genome	Chrysemys_picta_bellii-3.0.3	CEGMA, CVG	233	199	85.41	1.01	1.01	231	99.14	2	0.86
Chelonia mydas (green sea turtle)	Reptilia, Vertebrata, Metazoa, Eukaryota	genome	CheMyd_1.0	CEGMA, CVG	233	200	85.84	1.04	4	230	98.71	3	1.29
Pelodiscus sinensis (chinese softshell turtle)	Reptilia, Vertebrata, Metazoa, Eukaryota	genome	PelSin_1.0	CEGMA, CVG	233	189	81.12	1.06	5.29	228	97.85	5	2.15
Alligator mississippiensis (american alligator)	Reptilia, Vertebrata, Metazoa, Eukaryota	genome	ASM28112v3	CEGMA, CVG	233	204	87.55	1	0.49	231	99.14	2	0.86
Alligator sinensis (chinese alligator)	Reptilia, Vertebrata, Metazoa, Eukaryota	genome	ASM45574v1	CEGMA, CVG	233	201	86.27	1.02	1.99	231	99.14	2	0.86
Crocodylus porosus (australian saltwater crocodile)	Reptilia, Vertebrata, Metazoa, Eukaryota	genome	CroPor_comp1	CEGMA, CVG	233	199	85.41	1.01	0.5	225	96.57	8	3.43
Anolis carolinensis (carolina anole)	Reptilia, Vertebrata, Metazoa, Eukaryota	genome	AnoCar2.0, anoCar2	CEGMA, CVG	233	206	88.41	1.02	2.43	230	98.71	3	1.29
Apalone spinifera (spiny softshell turtle)	Reptilia, Vertebrata, Metazoa, Eukaryota	genome	ASM38561v1	CEGMA, CVG	233	31	13.3	1.06	6.45	182	78.11	51	21.89
Python bivittatus (burmese python)	Reptilia, Vertebrata, Metazoa, Eukaryota	genome	Python_molurus_bivittatus-5.0.2	CEGMA, CVG	233	196	84.12	1.19	16.84	227	97.42	6	2.58
Gekko japonicus (japanese gecko)	Reptilia, Vertebrata, Metazoa, Eukaryota	genome	Gekko_japonicus_V1.1	CEGMA, CVG	233	188	80.69	1.14	12.77	228	97.85	5	2.15
Paroedura picta (madagascar ground gecko)	Reptilia, Vertebrata, Metazoa, Eukaryota	genome	Ppicta_assembly_v1	CEGMA, CVG	233	208	89.27	1.05	5.29	230	98.71	3	1.29
Pogona vitticeps (central bearded dragon)	Reptilia, Vertebrata, Metazoa, Eukaryota	genome	CEMB01000000	CEGMA, CVG	233	207	88.84	1.06	5.8	228	97.85	5	2.15
Protobothrops mucrosquamatus (brown spotted pit viper)	Reptilia, Vertebrata, Metazoa, Eukaryota	genome	P.Mucros_1.0	CEGMA, CVG	233	208	89.27	1.12	9.62	230	98.71	3	1.29
Ophiophagus hannah (king cobra)	Reptilia, Vertebrata, Metazoa, Eukaryota	genome	OphHan1.0	CEGMA, CVG	233	191	81.97	1.16	14.14	227	97.42	6	2.58
Thamnophis sirtalis (common garter snake)	Reptilia, Vertebrata, Metazoa, Eukaryota	genome	Thamnophis_sirtalis-6.0	CEGMA, CVG	233	148	63.52	1.07	6.76	210	90.13	23	9.87
Ophisaurus gracilis (burmese glass lizard)	Reptilia, Vertebrata, Metazoa, Eukaryota	genome	SRP052050	CEGMA, CVG	233	212	90.99	1.05	4.25	230	98.71	3	1.29
Xenopus laevis (african clawed frog)	Amphibia, Vertebrata, Metazoa, Eukaryota	genome	Xenopus_laevis_v2	CEGMA, CVG	233	218	93.56	1.41	39.45	231	99.14	2	0.86
Xenopus tropicalis (western clawed frog)	Amphibia, Vertebrata, Metazoa, Eukaryota	genome	Xenopus_tropicalis_v9.1	CEGMA, CVG	233	220	94.42	1.02	2.27	230	98.71	3	1.29
Latimeria chalumnae (west indian ocean coelacanth)	Osteichthyes, Vertebrata, Metazoa, Eukaryota	genome	LatCha1, latCha1	CEGMA, CVG	233	179	76.82	1.02	2.23	229	98.28	4	1.72
Latimeria chalumnae (west indian ocean coelacanth)	Osteichthyes, Vertebrata, Metazoa, Eukaryota	genome	LatCha_J1.0	CEGMA, CVG	233	165	70.82	1.12	10.3	224	96.14	9	3.86
Danio rerio (zebrafish)	Osteichthyes, Vertebrata, Metazoa, Eukaryota	genome	GRCz10	CEGMA, CVG	233	217	93.13	1.02	2.3	232	99.57	1	0.43
Danio rerio (zebrafish)	Osteichthyes, Vertebrata, Metazoa, Eukaryota	genome	WGS31	CEGMA, CVG	233	201	86.27	1.12	9.95	231	99.14	2	0.86
Danio rerio (zebrafish)	Osteichthyes, Vertebrata, Metazoa, Eukaryota	genome	Zebrafish_Genome_Assembly_WGS32	CEGMA, CVG	233	201	86.27	1.03	2.49	227	97.42	6	2.58
Danio rerio (zebrafish)	Osteichthyes, Vertebrata, Metazoa, Eukaryota	genome	CG2v1.0	CEGMA, CVG	233	141	60.52	1.63	39.72	221	94.85	12	5.15
Astyanax mexicanus (mexican tetra)	Osteichthyes, Vertebrata, Metazoa, Eukaryota	genome	Astyanax_mexicanus-1.0.2	CEGMA, CVG	233	175	75.11	1.05	4.57	225	96.57	8	3.43
Gadus morhua (atlantic cod)	Osteichthyes, Vertebrata, Metazoa, Eukaryota	genome	GadMor_May2010	CEGMA, CVG	233	148	63.52	1.03	2.7	214	91.85	19	8.15
Gasterosteus aculeatus (three-spined stickleback)	Osteichthyes, Vertebrata, Metazoa, Eukaryota	genome	ASM18067v1	CEGMA, CVG	233	215	92.27	1.5	34.88	229	98.28	4	1.72
Hippocampus comes (tiger tail seahorse)	Osteichthyes, Vertebrata, Metazoa, Eukaryota	genome	H_comes_QL1_v1	CEGMA, CVG	233	224	96.14	1.03	3.12	232	99.57	1	0.43
Neolamprologus brichardi (neolamprologus_brichardi)	Osteichthyes, Vertebrata, Metazoa, Eukaryota	genome	NeoBri1.0	CEGMA, CVG	233	207	88.84	1.02	2.42	228	97.85	5	2.15
Oreochromis niloticus (nile tilapia)	Osteichthyes, Vertebrata, Metazoa, Eukaryota	genome	Orenil1.1, oreNil2	CEGMA, CVG	233	232	99.57	1.03	3.02	232	99.57	1	0.43
Oryzias latipes (japanese rice fish)	Osteichthyes, Vertebrata, Metazoa, Eukaryota	genome	ASM31367v1	CEGMA, CVG	233	218	93.56	1.04	4.13	231	99.14	2	0.86
Takifugu rubripes (japanese puffer)	Osteichthyes, Vertebrata, Metazoa, Eukaryota	genome	FUGU5	CEGMA, CVG	233	218	93.56	1.02	1.83	226	97	7	3
Tetraodon nigroviridis (green spotted puffer)	Osteichthyes, Vertebrata, Metazoa, Eukaryota	genome	ASM18073v1	CEGMA, CVG	233	211	90.56	1.11	9.48	222	95.28	11	4.72
Thunnus orientalis (pacific bluefin tuna)	Osteichthyes, Vertebrata, Metazoa, Eukaryota	genome	Thunnus_orientalis_ver_Ba_1.0	CEGMA, CVG	233	92	39.48	2.71	76.09	191	81.97	42	18.03
Xiphophorus maculatus (southern platyfish)	Osteichthyes, Vertebrata, Metazoa, Eukaryota	genome	Xiphophorus_maculatus-4.4.2	CEGMA, CVG	233	227	97.42	1.05	4.85	231	99.14	2	0.86
Gambusia affinis (western mosquitofish)	Osteichthyes, Vertebrata, Metazoa, Eukaryota	genome	ASM309773v1	CEGMA, CVG	233	226	97	1.03	2.65	230	98.71	3	1.29
Anguilla japonica (japanese eel)	Osteichthyes, Vertebrata, Metazoa, Eukaryota	genome	japanese_eel_genome_v1_25_oct_2011_japonica_c401b400k25m200_sspa	CEGMA, CVG	233	186	79.83	1.38	32.26	228	97.85	5	2.15
Lepisosteus oculatus (spotted gar)	Osteichthyes, Vertebrata, Metazoa, Eukaryota	genome	LepOcu1	CEGMA, CVG	233	223	95.71	1.01	1.35	232	99.57	1	0.43
Callorhinchus milii (Australian ghostshark)	Cartilaginous, Vertebrata, Metazoa, Eukaryota	genome	Callorhinchus_milii-6.1.3	CEGMA, CVG	233	227	97.42	1.06	4.85	231	99.14	2	0.86
Leucoraja erinacea (little skate)	Cartilaginous, Vertebrata, Metazoa, Eukaryota	genome	LER_WGS_1	CEGMA, CVG	233	2	0.86	3	100	33	14.16	200	85.84
Rhincodon typus (whale shark)	Cartilaginous, Vertebrata, Metazoa, Eukaryota	genome	Rhincodon_v1	CEGMA, CVG	233	18	7.73	2	61.11	148	63.52	85	36.48
Lethenteron camtschaticum (arctic lamprey)	Cyclostomata, Vertebrata, Metazoa, Eukaryota	genome	LetJap1.0	CEGMA, CVG	233	194	83.26	1.06	4.64	224	96.14	9	3.86
Petromyzon marinus (sea lamprey)	Cyclostomata, Vertebrata, Metazoa, Eukaryota	genome	Petromyzon_marinus-7.0, petMar2	CEGMA, CVG	233	167	71.67	1.34	24.55	216	92.7	17	7.3
Petromyzon marinus (sea lamprey)	Cyclostomata, Vertebrata, Metazoa, Eukaryota	genome	Pmar_germline_1.0	CEGMA, CVG	233	225	96.57	1.04	3.56	229	98.28	4	1.72
Eublepharis macularius (leopard gecko)	Reptilia, Vertebrata, Metazoa, Eukaryota	transcriptome	Eublepharis_mix_transcriptome	BUSCO_v2, CVG	233	39	16.74	1.08	7.69	149	63.95	84	36.05
Chalcides ocellatus (ocellated skink)	Reptilia, Vertebrata, Metazoa, Eukaryota	transcriptome	Chalcides_transcriptome	BUSCO_v2, CVG	233	182	78.11	1.12	10.44	209	89.7	24	10.3
Sphenodon punctatus (tuatara)	Reptilia, Vertebrata, Metazoa, Eukaryota	transcriptome	Sphenodon_transcriptome	BUSCO_v2, CVG	233	45	19.31	1.02	2.22	108	46.35	125	53.65
Python molurus bivittatus (burmese python)	Reptilia, Vertebrata, Metazoa, Eukaryota	transcriptome	Python_transcriptome	BUSCO_v2, CVG	233	30	12.88	1.03	3.33	100	42.92	133	57.08
Chamaeleo chamaeleon (common chameleon)	Reptilia, Vertebrata, Metazoa, Eukaryota	transcriptome	Chameleon_transcriptome	BUSCO_v2, CVG	233	11	4.72	1	0	100	42.92	133	57.08
Thamnophis elegans (western terrestrial garter snake)	Reptilia, Vertebrata, Metazoa, Eukaryota	transcriptome	Thamnophis_transcriptome	BUSCO_v2, CVG	233	109	46.78	1.03	2.75	193	82.83	40	17.17
Alligator mississippiensis (american alligator)	Reptilia, Vertebrata, Metazoa, Eukaryota	transcriptome	Amississippensis_transcriptome	BUSCO_v2, CVG	233	8	3.43	1	0	61	26.18	172	73.82
Paroedura picta (madagascar ground gecko)	Reptilia, Vertebrata, Metazoa, Eukaryota	transcriptome	Paroedura_picta_denovo_transcriptome	BUSCO_v2, CVG	233	233	100	2.69	90.56	233	100	0	0
Oncorhynchus mykiss (rainbow trout)	Osteichthyes, Vertebrata, Metazoa, Eukaryota	transcriptome	All_Transcripts_44990	BUSCO_v2, CVG	233	197	84.55	1.56	55.84	220	94.42	13	5.58
Amia calva (bowfin)	Osteichthyes, Vertebrata, Metazoa, Eukaryota	transcriptome	GEUG01.1	BUSCO_v2, CVG	233	230	98.71	1.18	14.78	231	99.14	2	0.86
Acipenser sinensis (chinese sturgeon)	Osteichthyes, Vertebrata, Metazoa, Eukaryota	transcriptome	GETX01.1	BUSCO_v2, CVG	233	174	74.68	1.02	1.72	214	91.85	19	8.15
Leucoraja erinacea (little skate)	Cartilaginous, Vertebrata, Metazoa, Eukaryota	transcriptome	LittleSkate-Transcriptome-Contigs-Build2	BUSCO_v2, CVG	233	184	78.97	1.02	1.09	224	96.14	9	3.86
Scyliorhinus canicula (lesser-spotted catshark)	Cartilaginous, Vertebrata, Metazoa, Eukaryota	transcriptome	SmallerSpottedCatshark-Transcriptome-Contigs	BUSCO_v2, CVG	233	159	68.24	1.03	2.52	222	95.28	11	4.72
Callorhinchus milii (elephant shark)	Cartilaginous, Vertebrata, Metazoa, Eukaryota	transcriptome	ElephantShark-Transcriptome-Contigs	BUSCO_v2, CVG	233	145	62.23	1.01	0.69	212	90.99	21	9.01
Scyliorhinus canicula (lesser-spotted catshark)	Cartilaginous, Vertebrata, Metazoa, Eukaryota	transcriptome	Sca_all_tissues300	BUSCO_v2, CVG	233	200	85.84	1.32	24	217	93.13	16	6.87
Scyliorhinus torazame (Cloudy Dogfish)	Cartilaginous, Vertebrata, Metazoa, Eukaryota	transcriptome	St_unigene_b2	BUSCO_v2, CVG	233	9	3.86	1.11	11.11	66	28.33	167	71.67
Eptatretus burgeri (Hagfish)	Cyclostomata, Vertebrata, Metazoa, Eukaryota	transcriptome	Eb_unigene_b2	BUSCO_v2, CVG	233	28	12.02	1.04	3.57	92	39.48	141	60.52