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Completeness Assessment of Genome/Transcriptome Sequences

Completeness Score Database

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Species Taxonomic category Type Assembly version Completeness Assessment
Program, Gene set # of core genes queried # of com- plete % of com- plete Avg. ortho per core genes % of multi- ortho # of com- plete + partial % of com- plete + partial # of missing % of missing
Homo sapiens (human)Mammalia, Vertebrata, Metazoa, EukaryotagenomeGRCh38.p9CEGMA, CVG23321592.271.118.8423098.7131.29
Pan troglodytes (chimpanzee)Mammalia, Vertebrata, Metazoa, EukaryotagenomePan_troglodytes-2.1.4, CHIMP2.1.4, panTro4CEGMA, CVG23321290.991.098.0222897.8552.15
Pan troglodytes (chimpanzee)Mammalia, Vertebrata, Metazoa, EukaryotagenomePan_tro3.0CEGMA, CVG23321391.421.1310.3322998.2841.72
Callithrix jacchus (white-tufted-ear marmoset)Mammalia, Vertebrata, Metazoa, EukaryotagenomeCallithrix_jacchus-3.2, calJac3CEGMA, CVG23321692.71.1712.9622797.4262.58
Saimiri boliviensis (bolivian squirrel monkey)Mammalia, Vertebrata, Metazoa, EukaryotagenomeSaiBol1.0CEGMA, CVG23321290.991.098.0223199.1420.86
Mus musculus (house mouse)Mammalia, Vertebrata, Metazoa, EukaryotagenomeGRCm38.p5CEGMA, CVG23322596.571.118.4423199.1420.86
Heterocephalus glaber (naked mole-rat)Mammalia, Vertebrata, Metazoa, EukaryotagenomeHetGla_1.0CEGMA, CVG23321793.131.4829.4923098.7131.29
Heterocephalus glaber (naked mole-rat)Mammalia, Vertebrata, Metazoa, EukaryotagenomehetGla2, HetGla_female_1.0CEGMA, CVG23322094.421.424.5523098.7131.29
Bos taurus (cattle)Mammalia, Vertebrata, Metazoa, EukaryotagenomeARS-UCD1.2CEGMA, CVG23321993.991.076.8523199.1420.86
Camelus ferus (wild bactrian camel)Mammalia, Vertebrata, Metazoa, EukaryotagenomeCB1CEGMA, CVG23321793.131.066.4522897.8552.15
Equus caballus (horse)Mammalia, Vertebrata, Metazoa, EukaryotagenomeEquCab3.0CEGMA, CVG23322295.281.053.623299.5710.43
Canis lupus familiaris (dog)Mammalia, Vertebrata, Metazoa, EukaryotagenomeCanFam3.1, canFam3CEGMA, CVG23322194.851.075.4322998.2841.72
Felis catus (domestic cat)Mammalia, Vertebrata, Metazoa, EukaryotagenomeFelis_catus_8.0, felCat8CEGMA, CVG23321592.271.043.7223098.7131.29
Panthera tigris (amur tiger)Mammalia, Vertebrata, Metazoa, EukaryotagenomePanTig1.0CEGMA, CVG23321290.991.033.323199.1420.86
Ailuropoda melanoleuca (giant panda)Mammalia, Vertebrata, Metazoa, EukaryotagenomeAilMel_1.0, ailMel1CEGMA, CVG23321391.421.032.8222998.2841.72
Desmodus rotundus (common vampire bat)Mammalia, Vertebrata, Metazoa, EukaryotagenomeASM294091v2CEGMA, CVG23321592.271.033.2622897.8552.15
Loxodonta africana (african savanna elephant)Mammalia, Vertebrata, Metazoa, EukaryotagenomeLoxafr3.0, loxArf3CEGMA, CVG23321993.991.044.1122998.2841.72
Phocoena phocoena (harbor porpoise)Mammalia, Vertebrata, Metazoa, EukaryotagenomeASM307100v1CEGMA, CVG23321592.271.054.1923098.7131.29
Tursiops truncatus (common bottlenose dolphin)Mammalia, Vertebrata, Metazoa, EukaryotagenomeTtru_1.4, turTru2CEGMA, CVG23316369.961.2817.7922596.5783.43
Giraffa camelopardalis tippelskirchi (giraffe)Mammalia, Vertebrata, Metazoa, EukaryotagenomeASM165123v1CEGMA, CVG23318679.831.1110.7522998.2841.72
Dasypus novemcinctus (nine-banded armadillo)Mammalia, Vertebrata, Metazoa, EukaryotagenomeDasnov3.0, dasNov3CEGMA, CVG23319684.121.129.6922797.4262.58
Choloepus hoffmanni (hoffmann's two-toed sloth)Mammalia, Vertebrata, Metazoa, EukaryotagenomeC_hoffmanni-2.0.1CEGMA, CVG23317876.391.426.9722797.4262.58
Macropus eugenii (tammar wallaby)Mammalia, Vertebrata, Metazoa, EukaryotagenomeMeug_1.1, macEug2CEGMA, CVG2339741.631.3224.7419483.263916.74
Sarcophilus harrisii (tasmanian devil)Mammalia, Vertebrata, Metazoa, EukaryotagenomeDevil_ref_v7.0, sarHar1 CEGMA, CVG23320989.71.022.3923098.7131.29
Phascolarctos cinereus (koala)Mammalia, Vertebrata, Metazoa, EukaryotagenomephaCin_unsw_v4.1CEGMA, CVG23321692.71.086.0223098.7131.29
Monodelphis domestica (gray short-tailed opossum)Mammalia, Vertebrata, Metazoa, EukaryotagenomeMonDom5CEGMA, CVG23321491.851.127.9422998.2841.72
Ornithorhynchus anatinus (platypus)Mammalia, Vertebrata, Metazoa, EukaryotagenomeOrnithorhynchus_anatinus-5.0.1CEGMA, CVG23318278.111.1913.7422897.8552.15
Taeniopygia guttata (zebra finch)Aves, Vertebrata, Metazoa, EukaryotagenomeTaeniopygia_guttata-3.2.4CEGMA, CVG23321993.991.054.5723299.5710.43
Coturnix japonica (japanese quail)Aves, Vertebrata, Metazoa, EukaryotagenomeCoja_2.0aCEGMA, CVG233226971.043.123199.1420.86
Coturnix japonica (japanese quail)Aves, Vertebrata, Metazoa, EukaryotagenomeCoturnix_japonica_2.0CEGMA, CVG23322797.421.032.6423299.5710.43
Gallus gallus (chicken)Aves, Vertebrata, Metazoa, EukaryotagenomeGallus_gallus-5.0CEGMA, CVG23322596.571.021.7823299.5710.43
Gallus gallus (chicken)Aves, Vertebrata, Metazoa, EukaryotagenomeGRCg6aCEGMA, CVG233226971.021.7723299.5710.43
Meleagris gallopavo (wild turkey)Aves, Vertebrata, Metazoa, EukaryotagenomeTurkey_5.0CEGMA, CVG23320587.981.032.9323199.1420.86
Anas platyrhynchos (wild duck)Aves, Vertebrata, Metazoa, EukaryotagenomeBGI_duck_1.0CEGMA, CVG23320587.981.077.3222998.2841.72
Melopsittacus undulatus (budgerigar)Aves, Vertebrata, Metazoa, EukaryotagenomeMelopsittacus_undulatus_6.3, melUnd1CEGMA, CVG23320889.271.022.422797.4262.58
Columba livia (rock pigeon)Aves, Vertebrata, Metazoa, EukaryotagenomeCliv_2.1CEGMA, CVG23321793.131.031.8423299.5710.43
Gavialis gangeticus (gharial)Reptilia, Vertebrata, Metazoa, EukaryotagenomeGavGan_comp1CEGMA, CVG23318780.261.010.5322295.28114.72
Gavialis gangeticus (gharial)Reptilia, Vertebrata, Metazoa, Eukaryotagenomeggan_v0.2CEGMA, CVG23314260.941.1814.792269773
Chrysemys picta bellii (painted turtle)Reptilia, Vertebrata, Metazoa, EukaryotagenomeChrysemys_picta_bellii-3.0.3CEGMA, CVG23319985.411.011.0123199.1420.86
Chelonia mydas (green sea turtle)Reptilia, Vertebrata, Metazoa, EukaryotagenomeCheMyd_1.0CEGMA, CVG23320085.841.04423098.7131.29
Pelodiscus sinensis (chinese softshell turtle)Reptilia, Vertebrata, Metazoa, EukaryotagenomePelSin_1.0CEGMA, CVG23318981.121.065.2922897.8552.15
Alligator mississippiensis (american alligator)Reptilia, Vertebrata, Metazoa, EukaryotagenomeASM28112v3CEGMA, CVG23320487.5510.4923199.1420.86
Alligator sinensis (chinese alligator)Reptilia, Vertebrata, Metazoa, EukaryotagenomeASM45574v1CEGMA, CVG23320186.271.021.9923199.1420.86
Crocodylus porosus (australian saltwater crocodile)Reptilia, Vertebrata, Metazoa, EukaryotagenomeCroPor_comp1CEGMA, CVG23319985.411.010.522596.5783.43
Anolis carolinensis (carolina anole)Reptilia, Vertebrata, Metazoa, EukaryotagenomeAnoCar2.0, anoCar2CEGMA, CVG23320688.411.022.4323098.7131.29
Apalone spinifera (spiny softshell turtle)Reptilia, Vertebrata, Metazoa, EukaryotagenomeASM38561v1CEGMA, CVG2333113.31.066.4518278.115121.89
Python bivittatus (burmese python)Reptilia, Vertebrata, Metazoa, EukaryotagenomePython_molurus_bivittatus-5.0.2CEGMA, CVG23319684.121.1916.8422797.4262.58
Gekko japonicus (japanese gecko)Reptilia, Vertebrata, Metazoa, EukaryotagenomeGekko_japonicus_V1.1CEGMA, CVG23318880.691.1412.7722897.8552.15
Paroedura picta (madagascar ground gecko)Reptilia, Vertebrata, Metazoa, EukaryotagenomePpicta_assembly_v1CEGMA, CVG23320889.271.055.2923098.7131.29
Pogona vitticeps (central bearded dragon)Reptilia, Vertebrata, Metazoa, EukaryotagenomeCEMB01000000CEGMA, CVG23320788.841.065.822897.8552.15
Protobothrops mucrosquamatus (brown spotted pit viper)Reptilia, Vertebrata, Metazoa, EukaryotagenomeP.Mucros_1.0CEGMA, CVG23320889.271.129.6223098.7131.29
Ophiophagus hannah (king cobra)Reptilia, Vertebrata, Metazoa, EukaryotagenomeOphHan1.0CEGMA, CVG23319181.971.1614.1422797.4262.58
Thamnophis sirtalis (common garter snake)Reptilia, Vertebrata, Metazoa, EukaryotagenomeThamnophis_sirtalis-6.0CEGMA, CVG23314863.521.076.7621090.13239.87
Ophisaurus gracilis (burmese glass lizard)Reptilia, Vertebrata, Metazoa, EukaryotagenomeSRP052050CEGMA, CVG23321290.991.054.2523098.7131.29
Xenopus laevis (african clawed frog)Amphibia, Vertebrata, Metazoa, EukaryotagenomeXenopus_laevis_v2CEGMA, CVG23321893.561.4139.4523199.1420.86
Xenopus tropicalis (western clawed frog)Amphibia, Vertebrata, Metazoa, EukaryotagenomeXenopus_tropicalis_v9.1CEGMA, CVG23322094.421.022.2723098.7131.29
Latimeria chalumnae (west indian ocean coelacanth)Osteichthyes, Vertebrata, Metazoa, EukaryotagenomeLatCha1, latCha1CEGMA, CVG23317976.821.022.2322998.2841.72
Latimeria chalumnae (west indian ocean coelacanth)Osteichthyes, Vertebrata, Metazoa, EukaryotagenomeLatCha_J1.0CEGMA, CVG23316570.821.1210.322496.1493.86
Danio rerio (zebrafish)Osteichthyes, Vertebrata, Metazoa, EukaryotagenomeGRCz10CEGMA, CVG23321793.131.022.323299.5710.43
Danio rerio (zebrafish)Osteichthyes, Vertebrata, Metazoa, EukaryotagenomeWGS31CEGMA, CVG23320186.271.129.9523199.1420.86
Danio rerio (zebrafish)Osteichthyes, Vertebrata, Metazoa, EukaryotagenomeZebrafish_Genome_Assembly_WGS32CEGMA, CVG23320186.271.032.4922797.4262.58
Danio rerio (zebrafish)Osteichthyes, Vertebrata, Metazoa, EukaryotagenomeCG2v1.0CEGMA, CVG23314160.521.6339.7222194.85125.15
Astyanax mexicanus (mexican tetra)Osteichthyes, Vertebrata, Metazoa, EukaryotagenomeAstyanax_mexicanus-1.0.2CEGMA, CVG23317575.111.054.5722596.5783.43
Gadus morhua (atlantic cod)Osteichthyes, Vertebrata, Metazoa, EukaryotagenomeGadMor_May2010CEGMA, CVG23314863.521.032.721491.85198.15
Gasterosteus aculeatus (three-spined stickleback)Osteichthyes, Vertebrata, Metazoa, EukaryotagenomeASM18067v1CEGMA, CVG23321592.271.534.8822998.2841.72
Hippocampus comes (tiger tail seahorse)Osteichthyes, Vertebrata, Metazoa, EukaryotagenomeH_comes_QL1_v1CEGMA, CVG23322496.141.033.1223299.5710.43
Neolamprologus brichardi (neolamprologus_brichardi)Osteichthyes, Vertebrata, Metazoa, EukaryotagenomeNeoBri1.0CEGMA, CVG23320788.841.022.4222897.8552.15
Oreochromis niloticus (nile tilapia)Osteichthyes, Vertebrata, Metazoa, EukaryotagenomeOrenil1.1, oreNil2CEGMA, CVG23323299.571.033.0223299.5710.43
Oryzias latipes (japanese rice fish)Osteichthyes, Vertebrata, Metazoa, EukaryotagenomeASM31367v1CEGMA, CVG23321893.561.044.1323199.1420.86
Takifugu rubripes (japanese puffer)Osteichthyes, Vertebrata, Metazoa, EukaryotagenomeFUGU5CEGMA, CVG23321893.561.021.832269773
Tetraodon nigroviridis (green spotted puffer)Osteichthyes, Vertebrata, Metazoa, EukaryotagenomeASM18073v1CEGMA, CVG23321190.561.119.4822295.28114.72
Thunnus orientalis (pacific bluefin tuna)Osteichthyes, Vertebrata, Metazoa, EukaryotagenomeThunnus_orientalis_ver_Ba_1.0CEGMA, CVG2339239.482.7176.0919181.974218.03
Xiphophorus maculatus (southern platyfish)Osteichthyes, Vertebrata, Metazoa, EukaryotagenomeXiphophorus_maculatus-4.4.2CEGMA, CVG23322797.421.054.8523199.1420.86
Gambusia affinis (western mosquitofish)Osteichthyes, Vertebrata, Metazoa, EukaryotagenomeASM309773v1CEGMA, CVG233226971.032.6523098.7131.29
Anguilla japonica (japanese eel)Osteichthyes, Vertebrata, Metazoa, Eukaryotagenomejapanese_eel_genome_v1_25_oct_2011_japonica_c401b400k25m200_sspaCEGMA, CVG23318679.831.3832.2622897.8552.15
Lepisosteus oculatus (spotted gar)Osteichthyes, Vertebrata, Metazoa, EukaryotagenomeLepOcu1CEGMA, CVG23322395.711.011.3523299.5710.43
Callorhinchus milii (Australian ghostshark)Cartilaginous, Vertebrata, Metazoa, EukaryotagenomeCallorhinchus_milii-6.1.3CEGMA, CVG23322797.421.064.8523199.1420.86
Leucoraja erinacea (little skate)Cartilaginous, Vertebrata, Metazoa, EukaryotagenomeLER_WGS_1CEGMA, CVG23320.8631003314.1620085.84
Rhincodon typus (whale shark)Cartilaginous, Vertebrata, Metazoa, EukaryotagenomeRhincodon_v1CEGMA, CVG233187.73261.1114863.528536.48
Lethenteron camtschaticum (arctic lamprey)Cyclostomata, Vertebrata, Metazoa, EukaryotagenomeLetJap1.0CEGMA, CVG23319483.261.064.6422496.1493.86
Petromyzon marinus (sea lamprey)Cyclostomata, Vertebrata, Metazoa, EukaryotagenomePetromyzon_marinus-7.0, petMar2CEGMA, CVG23316771.671.3424.5521692.7177.3
Petromyzon marinus (sea lamprey)Cyclostomata, Vertebrata, Metazoa, EukaryotagenomePmar_germline_1.0CEGMA, CVG23322596.571.043.5622998.2841.72
Eublepharis macularius (leopard gecko)Reptilia, Vertebrata, Metazoa, EukaryotatranscriptomeEublepharis_mix_transcriptomeBUSCO_v2, CVG2333916.741.087.6914963.958436.05
Chalcides ocellatus (ocellated skink)Reptilia, Vertebrata, Metazoa, EukaryotatranscriptomeChalcides_transcriptomeBUSCO_v2, CVG23318278.111.1210.4420989.72410.3
Sphenodon punctatus (tuatara)Reptilia, Vertebrata, Metazoa, EukaryotatranscriptomeSphenodon_transcriptomeBUSCO_v2, CVG2334519.311.022.2210846.3512553.65
Python molurus bivittatus (burmese python)Reptilia, Vertebrata, Metazoa, EukaryotatranscriptomePython_transcriptomeBUSCO_v2, CVG2333012.881.033.3310042.9213357.08
Chamaeleo chamaeleon (common chameleon)Reptilia, Vertebrata, Metazoa, EukaryotatranscriptomeChameleon_transcriptomeBUSCO_v2, CVG233114.721010042.9213357.08
Thamnophis elegans (western terrestrial garter snake)Reptilia, Vertebrata, Metazoa, EukaryotatranscriptomeThamnophis_transcriptomeBUSCO_v2, CVG23310946.781.032.7519382.834017.17
Alligator mississippiensis (american alligator)Reptilia, Vertebrata, Metazoa, EukaryotatranscriptomeAmississippensis_transcriptomeBUSCO_v2, CVG23383.43106126.1817273.82
Paroedura picta (madagascar ground gecko)Reptilia, Vertebrata, Metazoa, EukaryotatranscriptomeParoedura_picta_denovo_transcriptomeBUSCO_v2, CVG2332331002.6990.5623310000
Oncorhynchus mykiss (rainbow trout)Osteichthyes, Vertebrata, Metazoa, EukaryotatranscriptomeAll_Transcripts_44990BUSCO_v2, CVG23319784.551.5655.8422094.42135.58
Amia calva (bowfin)Osteichthyes, Vertebrata, Metazoa, EukaryotatranscriptomeGEUG01.1BUSCO_v2, CVG23323098.711.1814.7823199.1420.86
Acipenser sinensis (chinese sturgeon)Osteichthyes, Vertebrata, Metazoa, EukaryotatranscriptomeGETX01.1BUSCO_v2, CVG23317474.681.021.7221491.85198.15
Leucoraja erinacea (little skate)Cartilaginous, Vertebrata, Metazoa, EukaryotatranscriptomeLittleSkate-Transcriptome-Contigs-Build2BUSCO_v2, CVG23318478.971.021.0922496.1493.86
Scyliorhinus canicula (lesser-spotted catshark)Cartilaginous, Vertebrata, Metazoa, EukaryotatranscriptomeSmallerSpottedCatshark-Transcriptome-ContigsBUSCO_v2, CVG23315968.241.032.5222295.28114.72
Callorhinchus milii (elephant shark)Cartilaginous, Vertebrata, Metazoa, EukaryotatranscriptomeElephantShark-Transcriptome-ContigsBUSCO_v2, CVG23314562.231.010.6921290.99219.01
Scyliorhinus canicula (lesser-spotted catshark)Cartilaginous, Vertebrata, Metazoa, EukaryotatranscriptomeSca_all_tissues300BUSCO_v2, CVG23320085.841.322421793.13166.87
Scyliorhinus torazame (Cloudy Dogfish)Cartilaginous, Vertebrata, Metazoa, EukaryotatranscriptomeSt_unigene_b2BUSCO_v2, CVG23393.861.1111.116628.3316771.67
Eptatretus burgeri (Hagfish)Cyclostomata, Vertebrata, Metazoa, EukaryotatranscriptomeEb_unigene_b2BUSCO_v2, CVG2332812.021.043.579239.4814160.52