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Completeness Assessment of Genome/Transcriptome Sequences

Completeness Score Database

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Species Taxonomic category Type Assembly version Completeness Assessment
Program, Gene set # of core genes queried # of com- plete % of com- plete Avg. ortho per core genes % of multi- ortho # of com- plete + partial % of com- plete + partial # of missing % of missing
Homo sapiens (human)Mammalia, Vertebrata, Metazoa, EukaryotagenomeGRCh38.p9CEGMA, CVG23321592.271.118.8423098.7131.29
Pan troglodytes (chimpanzee)Mammalia, Vertebrata, Metazoa, EukaryotagenomePan_troglodytes-2.1.4, CHIMP2.1.4, panTro4CEGMA, CVG23321290.991.098.0222897.8552.15
Pan troglodytes (chimpanzee)Mammalia, Vertebrata, Metazoa, EukaryotagenomePan_tro3.0CEGMA, CVG23321391.421.1310.3322998.2841.72
Callithrix jacchus (white-tufted-ear marmoset)Mammalia, Vertebrata, Metazoa, EukaryotagenomeCallithrix_jacchus-3.2, calJac3CEGMA, CVG23321692.71.1712.9622797.4262.58
Saimiri boliviensis (bolivian squirrel monkey)Mammalia, Vertebrata, Metazoa, EukaryotagenomeSaiBol1.0CEGMA, CVG23321290.991.098.0223199.1420.86
Loxodonta africana (african savanna elephant)Mammalia, Vertebrata, Metazoa, EukaryotagenomeLoxafr3.0, loxArf3CEGMA, CVG23321993.991.044.1122998.2841.72
Giraffa camelopardalis tippelskirchi (giraffe)Mammalia, Vertebrata, Metazoa, EukaryotagenomeASM165123v1CEGMA, CVG23318679.831.1110.7522998.2841.72
Felis catus (domestic cat)Mammalia, Vertebrata, Metazoa, EukaryotagenomeFelis_catus_8.0, felCat8CEGMA, CVG23321592.271.043.7223098.7131.29
Canis lupus familiaris (dog)Mammalia, Vertebrata, Metazoa, EukaryotagenomeCanFam3.1, canFam3CEGMA, CVG23322194.851.075.4322998.2841.72
Macropus eugenii (tammar wallaby)Mammalia, Vertebrata, Metazoa, EukaryotagenomeMeug_1.1, macEug2CEGMA, CVG2339741.631.3224.7419483.263916.74
Monodelphis domestica (gray short-tailed opossum)Mammalia, Vertebrata, Metazoa, EukaryotagenomeMonDom5CEGMA, CVG23321491.851.127.9422998.2841.72
Sarcophilus harrisii (tasmanian devil)Mammalia, Vertebrata, Metazoa, EukaryotagenomeDevil_ref_v7.0, sarHar1 CEGMA, CVG23320989.71.022.3923098.7131.29
Mus musculus (house mouse)Mammalia, Vertebrata, Metazoa, EukaryotagenomeGRCm38.p5CEGMA, CVG23322596.571.118.4423199.1420.86
Ornithorhynchus anatinus (platypus)Mammalia, Vertebrata, Metazoa, EukaryotagenomeOrnithorhynchus_anatinus-5.0.1CEGMA, CVG23318278.111.1913.7422897.8552.15
Heterocephalus glaber (naked mole-rat)Mammalia, Vertebrata, Metazoa, EukaryotagenomeHetGla_1.0CEGMA, CVG23321793.131.4829.4923098.7131.29
Heterocephalus glaber (naked mole-rat)Mammalia, Vertebrata, Metazoa, EukaryotagenomehetGla2, HetGla_female_1.0CEGMA, CVG23322094.421.424.5523098.7131.29
Camelus ferus (wild bactrian camel)Mammalia, Vertebrata, Metazoa, EukaryotagenomeCB1CEGMA, CVG23321793.131.066.4522897.8552.15
Tursiops truncatus (common bottlenose dolphin)Mammalia, Vertebrata, Metazoa, EukaryotagenomeTtru_1.4, turTru2CEGMA, CVG23316369.961.2817.7922596.5783.43
Ailuropoda melanoleuca (giant panda)Mammalia, Vertebrata, Metazoa, EukaryotagenomeAilMel_1.0, ailMel1CEGMA, CVG23321391.421.032.8222998.2841.72
Panthera tigris (amur tiger)Mammalia, Vertebrata, Metazoa, EukaryotagenomePanTig1.0CEGMA, CVG23321290.991.033.323199.1420.86
Choloepus hoffmanni (hoffmann's two-toed sloth)Mammalia, Vertebrata, Metazoa, EukaryotagenomeC_hoffmanni-2.0.1CEGMA, CVG23317876.391.426.9722797.4262.58
Taeniopygia guttata (zebra finch)Aves, Vertebrata, Metazoa, EukaryotagenomeTaeniopygia_guttata-3.2.4CEGMA, CVG23321993.991.054.5723299.5710.43
Coturnix japonica (japanese quail)Aves, Vertebrata, Metazoa, EukaryotagenomeCoja_2.0aCEGMA, CVG233226971.043.123199.1420.86
Coturnix japonica (japanese quail)Aves, Vertebrata, Metazoa, EukaryotagenomeCoturnix_japonica_2.0CEGMA, CVG23322797.421.032.6423299.5710.43
Gallus gallus (chicken)Aves, Vertebrata, Metazoa, EukaryotagenomeGallus_gallus-5.0CEGMA, CVG23322596.571.021.7823299.5710.43
Meleagris gallopavo (wild turkey)Aves, Vertebrata, Metazoa, EukaryotagenomeTurkey_5.0CEGMA, CVG23320587.981.032.9323199.1420.86
Anas platyrhynchos (wild duck)Aves, Vertebrata, Metazoa, EukaryotagenomeBGI_duck_1.0CEGMA, CVG23320587.981.077.3222998.2841.72
Melopsittacus undulatus (budgerigar)Aves, Vertebrata, Metazoa, EukaryotagenomeMelopsittacus_undulatus_6.3, melUnd1CEGMA, CVG23320889.271.022.422797.4262.58
Gavialis gangeticus (gharial)Reptilia, Vertebrata, Metazoa, EukaryotagenomeGavGan_comp1CEGMA, CVG23318780.261.010.5322295.28114.72
Gavialis gangeticus (gharial)Reptilia, Vertebrata, Metazoa, Eukaryotagenomeggan_v0.2CEGMA, CVG23314260.941.1814.792269773
Dasypus novemcinctus (nine-banded armadillo)Reptilia, Vertebrata, Metazoa, EukaryotagenomeDasnov3.0, dasNov3CEGMA, CVG23318579.41.1310.2722596.5783.43
Chrysemys picta bellii (painted turtle)Reptilia, Vertebrata, Metazoa, EukaryotagenomeChrysemys_picta_bellii-3.0.3CEGMA, CVG23319985.411.011.0123199.1420.86
Chelonia mydas (green sea turtle)Reptilia, Vertebrata, Metazoa, EukaryotagenomeCheMyd_1.0CEGMA, CVG23320085.841.04423098.7131.29
Pelodiscus sinensis (chinese softshell turtle)Reptilia, Vertebrata, Metazoa, EukaryotagenomePelSin_1.0CEGMA, CVG23318981.121.065.2922897.8552.15
Alligator mississippiensis (american alligator)Reptilia, Vertebrata, Metazoa, EukaryotagenomeASM28112v3CEGMA, CVG23320487.5510.4923199.1420.86
Alligator sinensis (chinese alligator)Reptilia, Vertebrata, Metazoa, EukaryotagenomeASM45574v1CEGMA, CVG23320186.271.021.9923199.1420.86
Crocodylus porosus (australian saltwater crocodile)Reptilia, Vertebrata, Metazoa, EukaryotagenomeCroPor_comp1CEGMA, CVG23319985.411.010.522596.5783.43
Anolis carolinensis (carolina anole)Reptilia, Vertebrata, Metazoa, EukaryotagenomeAnoCar2.0, anoCar2CEGMA, CVG23320688.411.022.4323098.7131.29
Apalone spinifera (spiny softshell turtle)Reptilia, Vertebrata, Metazoa, EukaryotagenomeASM38561v1CEGMA, CVG2333113.31.066.4518278.115121.89
Python bivittatus (burmese python)Reptilia, Vertebrata, Metazoa, EukaryotagenomePython_molurus_bivittatus-5.0.2CEGMA, CVG23319684.121.1916.8422797.4262.58
Gekko japonicus (japanese gecko)Reptilia, Vertebrata, Metazoa, EukaryotagenomeGekko_japonicus_V1.1CEGMA, CVG23318880.691.1412.7722897.8552.15
Pogona vitticeps (central bearded dragon)Reptilia, Vertebrata, Metazoa, EukaryotagenomeCEMB01000000CEGMA, CVG23320788.841.065.822897.8552.15
Protobothrops mucrosquamatus (brown spotted pit viper)Reptilia, Vertebrata, Metazoa, EukaryotagenomeP.Mucros_1.0CEGMA, CVG23320889.271.129.6223098.7131.29
Ophiophagus hannah (king cobra)Reptilia, Vertebrata, Metazoa, EukaryotagenomeOphHan1.0CEGMA, CVG23319181.971.1614.1422797.4262.58
Thamnophis sirtalis (common garter snake)Reptilia, Vertebrata, Metazoa, EukaryotagenomeThamnophis_sirtalis-6.0CEGMA, CVG23314863.521.076.7621090.13239.87
Ophisaurus gracilis (burmese glass lizard)Reptilia, Vertebrata, Metazoa, EukaryotagenomeSRP052050CEGMA, CVG23321290.991.054.2523098.7131.29
Xenopus laevis (african clawed frog)Amphibia, Vertebrata, Metazoa, EukaryotagenomeXenopus_laevis_v2CEGMA, CVG23321893.561.4139.4523199.1420.86
Xenopus tropicalis (western clawed frog)Amphibia, Vertebrata, Metazoa, EukaryotagenomeXenopus_tropicalis_v9.1CEGMA, CVG23322094.421.022.2723098.7131.29
Latimeria chalumnae (west indian ocean coelacanth)Osteichthyes, Vertebrata, Metazoa, EukaryotagenomeLatCha1, latCha1CEGMA, CVG23317976.821.022.2322998.2841.72
Latimeria chalumnae (west indian ocean coelacanth)Osteichthyes, Vertebrata, Metazoa, EukaryotagenomeLatCha_J1.0CEGMA, CVG23316570.821.1210.322496.1493.86
Danio rerio (zebrafish)Osteichthyes, Vertebrata, Metazoa, EukaryotagenomeGRCz10CEGMA, CVG23321793.131.022.323299.5710.43
Danio rerio (zebrafish)Osteichthyes, Vertebrata, Metazoa, EukaryotagenomeWGS31CEGMA, CVG23320186.271.129.9523199.1420.86
Danio rerio (zebrafish)Osteichthyes, Vertebrata, Metazoa, EukaryotagenomeZebrafish_Genome_Assembly_WGS32CEGMA, CVG23320186.271.032.4922797.4262.58
Danio rerio (zebrafish)Osteichthyes, Vertebrata, Metazoa, EukaryotagenomeCG2v1.0CEGMA, CVG23314160.521.6339.7222194.85125.15
Astyanax mexicanus (mexican tetra)Osteichthyes, Vertebrata, Metazoa, EukaryotagenomeAstyanax_mexicanus-1.0.2CEGMA, CVG23317575.111.054.5722596.5783.43
Gadus morhua (atlantic cod)Osteichthyes, Vertebrata, Metazoa, EukaryotagenomeGadMor_May2010CEGMA, CVG23314863.521.032.721491.85198.15
Gasterosteus aculeatus (three-spined stickleback)Osteichthyes, Vertebrata, Metazoa, EukaryotagenomeASM18067v1CEGMA, CVG23321592.271.534.8822998.2841.72
Hippocampus comes (tiger tail seahorse)Osteichthyes, Vertebrata, Metazoa, EukaryotagenomeH_comes_QL1_v1CEGMA, CVG23322496.141.033.1223299.5710.43
Neolamprologus brichardi (neolamprologus_brichardi)Osteichthyes, Vertebrata, Metazoa, EukaryotagenomeNeoBri1.0CEGMA, CVG23320788.841.022.4222897.8552.15
Oreochromis niloticus (nile tilapia)Osteichthyes, Vertebrata, Metazoa, EukaryotagenomeOrenil1.1, oreNil2CEGMA, CVG23323299.571.033.0223299.5710.43
Oryzias latipes (japanese rice fish)Osteichthyes, Vertebrata, Metazoa, EukaryotagenomeASM31367v1CEGMA, CVG23321893.561.044.1323199.1420.86
Takifugu rubripes (japanese puffer)Osteichthyes, Vertebrata, Metazoa, EukaryotagenomeFUGU5CEGMA, CVG23321893.561.021.832269773
Tetraodon nigroviridis (green spotted puffer)Osteichthyes, Vertebrata, Metazoa, EukaryotagenomeASM18073v1CEGMA, CVG23321190.561.119.4822295.28114.72
Thunnus orientalis (pacific bluefin tuna)Osteichthyes, Vertebrata, Metazoa, EukaryotagenomeThunnus_orientalis_ver_Ba_1.0CEGMA, CVG2339239.482.7176.0919181.974218.03
Xiphophorus maculatus (southern platyfish)Osteichthyes, Vertebrata, Metazoa, EukaryotagenomeXiphophorus_maculatus-4.4.2CEGMA, CVG23322797.421.054.8523199.1420.86
Anguilla japonica (japanese eel)Osteichthyes, Vertebrata, Metazoa, Eukaryotagenomejapanese_eel_genome_v1_25_oct_2011_japonica_c401b400k25m200_sspaCEGMA, CVG23318679.831.3832.2622897.8552.15
Lepisosteus oculatus (spotted gar)Osteichthyes, Vertebrata, Metazoa, EukaryotagenomeLepOcu1CEGMA, CVG23322395.711.011.3523299.5710.43
Callorhinchus milii (Australian ghostshark)Cartilaginous, Vertebrata, Metazoa, EukaryotagenomeCallorhinchus_milii-6.1.3CEGMA, CVG23322194.851.075.4322998.2841.72
Leucoraja erinacea (little skate)Cartilaginous, Vertebrata, Metazoa, EukaryotagenomeLER_WGS_1CEGMA, CVG23320.8631003314.1620085.84
Leucoraja erinacea (little skate)Cartilaginous, Vertebrata, Metazoa, EukaryotagenomeLittleSkate-Contigs-Build2, LSb2CEGMA, CVG23320.8631003314.1620085.84
Rhincodon typus (whale shark)Cartilaginous, Vertebrata, Metazoa, EukaryotagenomeRhincodon_v1CEGMA, CVG233187.73261.1114863.528536.48
Petromyzon marinus (Sea lamprey)Cyclostomata, Vertebrata, Metazoa, EukaryotagenomePetromyzon_marinus-7.0, petMar2CEGMA, CVG23316771.671.3424.5521692.7177.3
Lethenteron camtschaticum (Arctic lamprey)Cyclostomata, Vertebrata, Metazoa, EukaryotagenomeLetJap1.0CEGMA, CVG23319483.261.064.6422496.1493.86
Eublepharis macularius (leopard gecko)Reptilia, Vertebrata, Metazoa, EukaryotatranscriptomeEublepharis_mix_transcriptomeBUSCO, CVG2333715.881.1616.2214763.098636.91
Chalcides ocellatus (ocellated skink)Reptilia, Vertebrata, Metazoa, EukaryotatranscriptomeChalcides_transcriptomeBUSCO, CVG23318278.111.1614.8420989.72410.3
Sphenodon punctatus (tuatara)Reptilia, Vertebrata, Metazoa, EukaryotatranscriptomeSphenodon_transcriptomeBUSCO, CVG2334519.311.044.4410545.0612854.94
Python molurus bivittatus (burmese python)Reptilia, Vertebrata, Metazoa, EukaryotatranscriptomePython_transcriptomeBUSCO, CVG2332912.451.033.459842.0613557.94
Chamaeleo chamaeleon (common chameleon)Reptilia, Vertebrata, Metazoa, EukaryotatranscriptomeChameleon_transcriptomeBUSCO, CVG233114.721.099.0910042.9213357.08
Thamnophis elegans (western terrestrial garter snake)Reptilia, Vertebrata, Metazoa, EukaryotatranscriptomeThamnophis_transcriptomeBUSCO, CVG23310846.351.076.4819181.974218.03
Alligator mississippiensis (american alligator)Reptilia, Vertebrata, Metazoa, EukaryotatranscriptomeAmississippensis_transcriptomeBUSCO, CVG23373106025.7517374.25
Paroedura picta (madagascar ground gecko)Reptilia, Vertebrata, Metazoa, EukaryotatranscriptomeParoedura_picta_denovo_transcriptomeBUSCO, CVG2332331002.1784.5523310000
Oncorhynchus mykiss (rainbow trout)Osteichthyes, Vertebrata, Metazoa, EukaryotatranscriptomeAll_Transcripts_44990BUSCO, CVG23319483.261.6864.4321893.56156.44
Amia calva (bowfin)Osteichthyes, Vertebrata, Metazoa, EukaryotatranscriptomeGEUG01.1BUSCO, CVG23322395.711.1412.112269773
Acipenser sinensis (chinese sturgeon)Osteichthyes, Vertebrata, Metazoa, EukaryotatranscriptomeGETX01.1BUSCO, CVG23317273.821.022.3321290.99219.01
Leucoraja erinacea (little skate)Cartilaginous, Vertebrata, Metazoa, EukaryotatranscriptomeLittleSkate-Transcriptome-Contigs-Build2BUSCO, CVG23317575.111.033.4321993.99146.01
Scyliorhinus canicula (lesser-spotted catshark)Cartilaginous, Vertebrata, Metazoa, EukaryotatranscriptomeSmallerSpottedCatshark-Transcriptome-ContigsBUSCO, CVG23315566.521.054.5221993.99146.01
Callorhinchus milii (elephant shark)Cartilaginous, Vertebrata, Metazoa, EukaryotatranscriptomeElephantShark-Transcriptome-ContigsBUSCO, CVG23314260.941.044.2321090.13239.87
Scyliorhinus canicula (lesser-spotted catshark)Cartilaginous, Vertebrata, Metazoa, EukaryotatranscriptomeSca_all_tissues300BUSCO, CVG23319784.551.1110.6621592.27187.73
Scyliorhinus torazame (Cloudy Dogfish)Cartilaginous, Vertebrata, Metazoa, EukaryotatranscriptomeSt_unigene_b2BUSCO, CVG23393.861.1111.116628.3316771.67
Eptatretus burgeri (Hagfish)Cyclostomata, Vertebrata, Metazoa, EukaryotatranscriptomeEb_unigene_b2BUSCO, CVG2332711.591.1111.118938.214461.8